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统计物理和蛋白质折叠讲义2025|PDF|Epub|mobi|kindle电子书版本百度云盘下载

（美）黄克逊著著
出版社：上海：复旦大学出版社
ISBN：730905203X
出版时间：2006
标注页数：144页
文件大小：30MB
文件页数：173页
主题词：统计物理学－应用－生物学－研究生－教学参考资料；蛋白质－分子折叠－研究生－教学参考资料

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图书目录

1．Entropy1

1.1 Statistical Ensembles1

1.2 Microcanonical Ensemble and Entropy3

1.3 Thermodynamics5

1.4 Principle of Maximum Entropy5

1.5 Example:Defects in Solid7

2．Maxwell-Boltzmann Distribution11

2.1 Classical Gas of Atoms11

2.2 The Most Probable Distribution12

2.3 The Distribution Function13

2.4 Thermodynamic Properties16

3．Free Energy17

3.1 Canonical Ensemble17

3.2 Energy Fluctuations20

3.3 The Free Energy20

3.4 Maxwell's Relations23

3.5 Example:Unwinding of DNA24

4．Chemical Potential27

4.1 Changing the Particle Number27

4.2 Grand Canonical Ensemble28

4.3 Thermodynamics30

4.4 Critical Fluctuations30

4.5 Example:Ideal Gas31

5．Phase Transitions33

5.1 First-Order Phase Transitions33

5.2 Second-Order Phase Transitions34

5.3 Van der Waals Equation of State37

5.4 Maxwell Construction40

6．Kinetics of Phase Transitions43

6.1 Nucleation and Spinodal Decomposition43

6.2 The Freezing of Water45

7．The Order Parameter49

7.1 Ginsburg-Landau Theory49

7.2 Second-Order Phase Transition50

7.3 First-Order Phase Transition51

7.4 Cahn-Hilliard Equation53

8．Correlation Function55

8.1 Correlation Length55

8.2 Large-Distance Correlations55

8.3 Universality Classes57

8.4 Compactness Index58

8.5 Scaling Properties58

9．Stochastic Processes61

9.1 Brownian Motion61

9.2 Random Walk63

9.3 Diffusion64

9.4 Central Limit Theorem65

9.5 Diffusion Equation65

10．Langevin Equation67

10.1 The Equation67

10.2 Solution68

10.3 Fluctuation-Dissipation Theorem69

10.4 Power Spectrum and Correlation69

10.5 Causality70

10.6 Energy Balance72

11．The Life Process75

11.1 Life75

11.2 Cell Structure76

11.3 Molecular Interactions78

11.4 Primary Protein Structure79

11.5 Secondary Protein Structure81

11.6 Tertiary Protein Structure82

11.7 Denatured State of Protein84

12．Self-Assembly85

12.1 Hydrophobic Effect85

12.2 Micelles and Bilayers87

12.3 Cell Membrane88

12.4 Kinetics of Self-Assembly90

12.5 Kinetic Arrest92

13．Kinetics of Protein Folding95

13.1 The Statistical View95

13.2 Denatured State96

13.3 Molten Globule97

13.4 Folding Funnel101

13.5 Convergent Evolution101

14．Power Laws in Protein Folding105

14.1 The Universal Range105

14.2 Collapse and Annealing106

14.3 Self-Avoiding Walk(SAW)108

15．Self-Avoiding Walk and Turbulence113

15.1 Kolmogorov's Law113

15.2 Vortex Model113

15.3 Quantum Turbulence116

15.4 Convergent Evolution in Turbulence117

16．Convergent Evolution in Protein Folding119

16.1 Mechanism of Convergent Evolution119

16.2 Energy Cascade in Turbulence120

16.3 Energy Cascade in the Polymer Chain120

16.4 Energy Cascade in the Molten Globule122

16.5 Secondary and Tertiary Structures123

A．Model of Energy Cascade in a Protein Molecule125

A.1 Brownian Motion of a Forced Harmonic Oscillator125

A.2 Coupled Oscillators127

A.2.1 Equations of Motion127

A.2.2 Energy Balance129

A.2.3 Fluctuation-Dissipation Theorem130

A.2.4 Perturbation Theory130

A.2.5 Weak-Damping Approximation131

A.3 Model of Protein Dynamics132

A.4 Fluctuation-Dissipation Theorem135

A.5 The Cascade Time136

A.6 Numerical Example137

Index141